What is an infection
The main article (“What is an infection?”) is about germs. This topic looks at infection itself: how a germ gets into the body, how infection differs from colonisation, and why it looks different in leukaemia.

01Short answer
02Simple explanation
Infection: a germ gets in and does harm.
Colonisation: a germ is present but does no harm.
Often from our own germs.
03Scientific explanation
Internal source: during neutropenia, some bloodstream infections come from gut and skin germs.
Weak inflammation: with few neutrophils the signs of inflammation are faint, so infection can stay “hidden”.
04What happens in the body?
A balance
Infection is a loss of balance between a germ and the body’s defence.
Colonisation and infection
The same germ can live harmlessly on a surface but cause infection once it enters tissue.

Inside and outside
Germs come both from our own flora and from the surroundings.

05How an infection develops
Four steps.




06Types of germ
| Type | Example sites |
|---|---|
| Bacteria | Blood, lungs, urinary tract, catheter |
| Viruses | Airways, herpes, CMV |
| Fungi | Mouth, lungs, blood |
| Parasites | Rare; with travel or food |
07Key terms
- Infection
- A germ entering and causing harm.
- Colonisation
- A germ present without harm.
- Pathogen
- A germ that causes disease.
- Flora
- The body’s normal germs.
- Inflammation
- The body’s response to injury and infection.
08Key points
- Infection is harm done by a germ.
- Colonisation is usually harmless.
- Many infections come from our own germs.
- With weak immunity, signs are faint.
- Fever is often the only sign.
- If you feel unwell, tell your team.
09Frequently asked questions
Can my own germs make me ill?
Yes, when defences are weak; that is why hygiene matters (“Hand and body hygiene”).
Does infection always cause fever?
No; steroids and older age can hide it.
Is colonisation treated?
Usually not, but in some cases your doctor may take special steps.
10Questions for your doctor
Take these questions to your appointment. The ones you save are collected on the “My questions” page and stay on this device only.
Can my own germs make me ill?
Does infection always cause fever?
Is colonisation treated?
12Sources
- MedlinePlus (U.S. National Library of Medicine). Bacterial Infections
- MedlinePlus (U.S. National Library of Medicine). Viral Infections
- National Cancer Institute (NCI). Infection and Neutropenia during Cancer Treatment
- American Cancer Society. Stem Cell Transplant Side Effects
- American Cancer Society. The Stem Cell Transplant Process
- Biology of Blood and Marrow Transplantation, 2009. Guidelines for preventing infectious complications among hematopoietic cell transplantation recipients: a global perspective
- InformedHealth.org (IQWiG), NCBI Bookshelf. In brief: How does the immune system work?
- InformedHealth.org (IQWiG), NCBI Bookshelf. In brief: The innate and adaptive immune systems
- MedlinePlus (U.S. National Library of Medicine). Immune System and Disorders
- Cancer Research UK. The immune system and cancer